Here we store material for the Data Analysis part of the CB2030, Systems Biology course.
This project is maintained by statisticalbiotechnology
Code | Day | Date | Time_ | Location | ID | The content of the Convocation |
---|---|---|---|---|---|---|
L1 | Wed | 01/11 | 08-10 | Q2 | All | Introduction |
C0 | Thu | 02/11 | 13-17 | Grå, Karmosin, Vit, Magenta | All | Software and Notebooks |
L2 | Fri | 03/11 | 08-10 | M3 | LK | Hypothesis Testing |
L3 | Mon | 06/11 | 16-18 | FR4 | LK | Multiple Testing |
L4 | Thu | 09/11 | 16-18 | FD5 | LK | Linear Models |
L5 | Mon | 13/11 | 08-10 | FR4 | LK | Supervised Learning |
L6 | Wed | 15/11 | 08-10 | FD5 | LK | Clustering |
C1 | Wed | 15/11 | 15-19 | Grå, Karmosin, Vit, Magenta | YZ,ME,KJ | Hypothesis Testing |
L7 | Fri | 17/11 | 13-15 | FR4 | LK | Principal Component Analysis |
L8 | Wed | 22/11 | 08-10 | FD5 | LK | Variational Auto Encoders |
L9 | Fri | 24/11 | 13-15 | FD5 | LK | Pathway Analysis |
L10 | Wed | 29/11 | 08-10 | FD5 | CZ | Genome-scale metabolic models and Linear Programming |
C2 | Thu | 30/11 | 13-17 | Brun, Grå, Grön | ME,YZ,KJ,MS | Machine Learning |
L11 | Fri | 01/12 | 08-10 | Q2 | CZ | Flux balance analysis |
L12 | Mon | 04/12 | 08-10 | M3 | CZ | Application of genome-scale metabolic models |
L13 | Wed | 06/12 | 08-10 | FD5 | FE | Protein Expression Analysis |
C3 | Wed | 06/12 | 13-17 | Grå, Karmosin, Vit, Magenta | MS, TS, KJ, YZ | Metabolic Modelling |
L14 | Fri | 08/12 | 10-12 | M3 | FE | The Concept of Gene Regulation |
L15 | Mon | 11/12 | 08-10 | FD5 | FE | Protein expression Quantitative Trait Loci (pQTL) |
C4 | Mon | 11/12 | 10-15 | Spelhallen, Sporthallen, Vit | TS,KJ,ME,YZ | Gene Regulation |
L16 | Wed | 13/12 | 13-15 | FR4 | CZ | Next-generation genome-scale metabolic modeling |
L17 | Thu | 14/12 | 15-17 | M3 | FE | Seminar: Tissue Specificity and Data Annotation |
L18 | Fri | 15/12 | 10-12 | FD5 | All | Q&A |
Exam | Tue | 9/1 | 14-18 | FA31, FB51 | All | Systems Biology |
We used the following codes:
ID | Name |
---|---|
LK | Lukas Käll |
CZ | Cheng Zhang |
FE | Fredrik Edfors |
KJ | Krzysztof Jurdzinski |
ME | Markus Ekvall |
MS | Mengnan Shi |
TS | Thanadol Sutantiwanichkul |
YZ | Yuqi Zheng |